[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: kaige & y)

EMDB-37529:
Structure of DDM1-nucleosome complex in the apo state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37533:
Structure of DDM1-nucleosome complex in ADP state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37535:
Structure of DDM1-nucleosome complex in ADP-BeFx state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37537:
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37538:
Structure of nucleosome core particle of Arabidopsis thaliana
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh5:
Structure of DDM1-nucleosome complex in the apo state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh8:
Structure of DDM1-nucleosome complex in ADP state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh9:
Structure of DDM1-nucleosome complex in ADP-BeFx state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wha:
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8whb:
Structure of nucleosome core particle of Arabidopsis thaliana
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37397:
Cryo-EM structure of the ABCG25 E232Q mutant bound to ATP and Magnesium
Method: single particle / : Xin J, Yan KG

EMDB-37418:
Cryo-EM structure of the ABCG25 bound to CHS
Method: single particle / : Xin J, Yan KG

EMDB-37426:
Cryo-EM structure of the ABCG25 bound to ABA
Method: single particle / : Xin J, Yan KG

EMDB-37455:
Cryo-EM structure of the ABCG25
Method: single particle / : Xin J, Yan KG

PDB-8wam:
Cryo-EM structure of the ABCG25 E232Q mutant bound to ATP and Magnesium
Method: single particle / : Xin J, Yan KG

PDB-8wba:
Cryo-EM structure of the ABCG25 bound to CHS
Method: single particle / : Xin J, Yan KG

PDB-8wbx:
Cryo-EM structure of the ABCG25 bound to ABA
Method: single particle / : Xin J, Yan KG

PDB-8wd6:
Cryo-EM structure of the ABCG25
Method: single particle / : Xin J, Yan KG

EMDB-34121:
Cryo-EM structure of full-length Myosin Va in the autoinhibited state
Method: single particle / : Niu F, Wei Z

PDB-7yv9:
Cryo-EM structure of full-length Myosin Va in the autoinhibited state
Method: single particle / : Niu F, Wei Z

EMDB-33832:
CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Method: single particle / : Du X, Du J

EMDB-33835:
CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution
Method: single particle / : Du X, Du J

EMDB-33836:
CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution
Method: single particle / : Du X, Du J

PDB-7yho:
CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Method: single particle / : Du X, Du J

PDB-7yhp:
CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution
Method: single particle / : Du X, Du J

PDB-7yhq:
CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution
Method: single particle / : Du X, Du J

EMDB-32944:
The complex structure of Omicron BA.1 RBD with BD604, S309,and S304
Method: single particle / : Huang M, Xie YF

PDB-7x1m:
The complex structure of Omicron BA.1 RBD with BD604, S309,and S304
Method: single particle / : Huang M, Xie YF, Qi JX

EMDB-10536:
SUMOylated apoAPC/C with repositioned APC2 WHB domain
Method: single particle / : Barford D, Yatskevich S

EMDB-10538:
SUMOylated apoAPC/C with density at APC2-APC4 interface
Method: single particle / : Barford D, Yatskevich S

PDB-6tnt:
SUMOylated apoAPC/C with repositioned APC2 WHB domain
Method: single particle / : Barford D, Yatskevich S

EMDB-11626:
Structure of inner kinetochore CCAN-Cenp-A complex (Cenp-HIKTW)
Method: single particle / : Yan K, Yang J, Zhang Z, Barford D

EMDB-30212:
State 3 of pre50SH ribosome from rrmj knock out E.coli strain
Method: single particle / : Wang W, Li WQ, Ge XL, Yan KG, Mandava CS, Sanyal S, Gao N

EMDB-30213:
State 2 of pre50SH ribosome from RrmJ knock out E.coli stain
Method: single particle / : Wei W, Wanqiu L, Xueliang G, Kaige Y, Chandra Sekhar M, Suparna S, Ning G

EMDB-30214:
State 1 of pre50SH ribosome from RrmJ knock out E.coli stain
Method: single particle / : Wang W, Li WQ, Ge XL, Yan KG, Mandava CS, Sanyal S, Gao N

EMDB-30215:
Mature 50S ribosomal subunit from RrmJ knock out E.coli strain
Method: single particle / : Wang W, Li WQ

PDB-7bv8:
Mature 50S ribosomal subunit from RrmJ knock out E.coli strain
Method: single particle / : Wang W, Li WQ, Ge XL, Yan KG, Mandava CS, Sanyal S, Gao N

EMDB-4971:
Structure of inner kinetochore CCAN complex
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

EMDB-4579:
Structure of inner kinetochore CCAN-Cenp-A complex
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

EMDB-4580:
Structure of inner kinetochore CCAN complex
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

EMDB-4581:
Structure of inner kinetochore CCAN complex with mask1
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

PDB-6qld:
Structure of inner kinetochore CCAN-Cenp-A complex
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

PDB-6qle:
Structure of inner kinetochore CCAN complex
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

PDB-6qlf:
Structure of inner kinetochore CCAN complex with mask1
Method: single particle / : Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Heck AJR, Barford D

EMDB-0095:
Cryo-EM structure of the CBF3-core-Ndc10-DBD complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

EMDB-0096:
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

EMDB-0097:
Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

PDB-6gyp:
Cryo-EM structure of the CBF3-core-Ndc10-DBD complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

PDB-6gys:
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

PDB-6gyu:
Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore
Method: single particle / : Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more